A. Donath, F. Externbrink, F. Jühling, M. Bernd, G. Fritzsch, M. Middendorf and P. F. Stadler
Improved Automatic Annotation of Metazoan Mitochondrial Genomes.
Poster at German Conference on Bioinformatics 2009 (GCB'09).

M. Bernt, D. Merkle, K. Ramsch, G. Fritzsch, M. Perseke, D. Bernhard, M. Schlegel, P. F. Stadler, M. Middendorf
CREx - A Tool for Analyzing Genomic Rearrangement Operations Based on Common Intervals.
Abstracts of Saxon Biotechnology Symposium 2007, Biotechnolgy Center, Technische Universität Dresden, 115, 2007.

M. Bernt, D. Merkle, M. Middendorf
A method for Solving the Preservation Reversal Median Problem.
Abstracts of Saxon Biotechnology Symposium 2007, Biotechnolgy Center, Technische Universität Dresden, 116, 2007.

M. Bernt, D. Merkle, M. Middendorf
From genome rearrangements to phylogenies.
Abstracts of 5th Biotechnolgy Symposium 2006, Center of Biotechnolgy and Biomedicine, University of Leipzig, 59, 2006.

S. Janson, D. Merkle, M. Middendorf
Solving molecular docking with particle swarm optimization.
Abstracts of 5th Biotechnolgy Symposium 2006, Center of Biotechnolgy and Biomedicine, University of Leipzig, 77, 2006.

M. Bernt, D. Merkle, M. Middendorf
Solving the Multiple Genome Rearrangement Problem
Proc. of the 19th Dubrovnik International Course and Conference on the Interfaces Among Mathematics, Chemistry and Computer Sciences, Inter-University Centre Dubrovnik, 6, 2004.
link

M. Bernt, D. Merkle, M. Middendorf
Heuristics for the Reversal Median Problem: How to select good reversals?
Proc. of the 20th Dubrovnik International Course and Conference on the Interfaces Among Mathematics, Chemistry and Computer Sciences, Inter-University Centre Dubrovnik, 3, 2005
link

M. Bernt, D. Merkle, M. Middendorf
Multiple Genome Rearrangement with conserved intervals.
Abstracts of 4th Biotechnolgy Symposium 2005, Center of Biotechnolgy and Biomedicine, University of Leipzig, 202, 2005.

D. Merkle, M. Middendorf
Combined Phylogenies: Hosts and Their Parasites.
Proc. of the 19th Dubrovnik International Course and Conference on the Interfaces Among Mathematics, Chemistry and Computer Sciences, Inter-University Centre Dubrovnik, 46, 2004.

E. Petzold, A. von Haeseler, D. Merkle, M. Middendorf
Efficient Parallel Parameter Estimation for Maximum Likelihood Reconstruction of Phylogenetic Trees.
Abstracts of 3rd Biotechnolgy Symposium 2004, Center of Biotechnolgy and Biomedicine, University of Leipzig, 228, 2004.

D. Merkle, M. Middendorf, R. Legat
Reconstruction of Host-Parasite Phylognies with Extinction Events
Abstracts of 3rd Biotechnolgy Symposium 2004, Center of Biotechnolgy and Biomedicine, University of Leipzig, 227, 2004.