M. Bernt, M. Middendorf
A Method for Computing an Inventory of Metazoan Mitochondrial Gene Order Rearrangements
BMC Bioinformatics, 12(Suppl 9):S6, 20122.
Proceedings of the Ninth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

K. Diwold, A. Aderhold, A. Scheidler, M. Middendorf
Performance Evaluation of Artificial Bee Colony Optimization and New Selection Schemes
Memetic Computing, 3(3): 149-162, 2011.

K. Diwold, T. Schaerf, M. R. Myerscough, M. Middendorf, M. Beekman
Deciding on the wing: in-flight decision making and search space sampling in the red dwarf honeybee Apis florea
Swarm Intelligence 5(2): 121-141, 2011.

A. Scheidler, M. Middendorf
Learning Classifier Systems to Evolve Classification Rules for Systems of Memory Constrained Components
Evolutionary Intelligence, 4(3): 127-143, 2011.

T. Latty, K. Ramsch, K. Ito, T. Nakagaki, D.J.T. Sumpter, M. Middendorf, and M. Beekman
Structure and formation of ant transportation networks
Journal of the Royal Society Interface, 8(62): 1298-1306, 2011.

M. Bernt, K.-Y. Chen, M.-C. Chen, A.-C. Chu, D. Merkle, H.-L. Wang, K.-M. Chao, M. Middendorf
Finding All Sorting Tandem Duplication Random Loss Operations
Journal of Discrete Algorithms, 9(1): 32-48, 2011.
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M. Geis, M. Middendorf
Particle Swarm Optimization for Finding RNA Secondary Structures
International Journal of Intelligent Computing and Cybernetics, 4(2): 160-186, 2011.