S. Lange, M. Middendorf
Multi Task Hyperreconfigurable Architectures: Models and Reconfiguration Problems
International Journal of Embedded Systems, 1(3/4): 154-164, 2005.

D. Merkle, M. Middendorf
Reconstruction of the Cophylogenetic History of Related Phylogenetic Trees with Divergence Timing Information
Theory in Biosciences 4: 277-299, 2005

D. Merkle, M. Middendorf
On solving permutation scheduling problems with ant colony optimization
International Journal of Systems Science, 36(5): 255-266, 2005

S. Lange, M. Middendorf
Hyperreconfigurable Architectures and the Partition into Hypercontexts Problem
Journal of Parallel and Distributed Computing, 65(6): 743-754, 2005.

S. Janson, M. Middendorf
A Hierarchical Particle Swarm Optimizer and its Adaptive Variant
IEEE Systems, Man and Cybernetics - Part B, 32(6): 1272- 1282, 2005.
Preliminary version in Proceedings of the Congress on Evolutionary Computation (CEC 2003), IEEE Press, 770--776, (2003).

D. Merkle, M. Middendorf, A. Scheidler
Decentralized Packet Clustering in Router-based Networks
International Journal of Foundations of Computer Science, 16(2): 321-341, 2005.
Preliminary version in: Proc. International Parallel and Distributed Processing Symposium (IPDPS-2004), Sixth International Workshop on Nature Inspired Distributed Computing (NIDISC'04), IEEE-CS Press, Santa Fe, 9 pp., 2004.
Preliminary version

S. Janson, M. Middendorf, M. Beekman
Honey bee swarms: How do scouts guide a swarm of uninformed bees?
Animal Behavior, 70: 349-358, 2005.

J. Branke, M. Middendorf, G. Noeth, M. Dessouky
Waiting Strategies for Dynamic Vehicle Routing
Transportation Science, 39(3): 298–312, 2005.