F. Jühling, J. Pütz, M. Bernt, A. Donath, M. Middendorf, C. Florentz, P. F. Stadler
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements.
Nucleic Acids Research, 40(7): 2833-2845, 2012,

A. Johansson, K. Ramsch, M. Middendorf, D.J. Sumpter
Tuning positive feedback for signal detection in noisy dynamic environments.
Journal of Theoretical Biology, 309: 88-95, 2012.

K. Ramsch, C. R. Reid, M. Beekman, M. Middendorf
A mathematical model of foraging in a dynamic environment by trail-laying Argentine ants
Journal of Theoretical Biology, 306:32-45, 2012.

A. Duò, R. Bruggmann, S. Zoller, M. Bernt, C. R. Gruenig
Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex
BMC Genomics, 13:166, 2012.

M. Dilcher, L. Hasib, M. Lechner, N. Wieseke, M. Middendorf, M. Marz, A. Koch, M. Spiegel, G. Dobler, F. T. Hufert, M. Weidmann
Genetic Characterisation of Tribec virus and Kemerovo virus, two tick-transmitted human-pathogenic Orbiviruses
Virology, 423(1): 68-76, 2012.