A. H. Sahyoun, M. Bernt, P. F. Stadler, K. Tout
GC Skew and Mitochondrial Origins of Replication
Mitochondrion, 17:56-66, 2014.

R. L.V. Moritz, M. Bernt, and M. Middendorf
Local Similarity Search to Find Gene Indicators in Mitochondrial Genomes
Biology, special issue: Developments in Bioinformatic Algorithms, 3(1), 220-242, 2014.
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M. Marz, N. Beerenwinkel, C. Drosten, M. Fricke, D. Frishman, I. L. Hofacker, D. Hoffmann, M. Middendorf, T. Rattei, P. F. Stadler, A. Töpfer
Challenges in RNA Virus Bioinformatics
Bioinformatics, 30 (13): 1793-1799, 2014.

N. J. R. Plowes, K. Ramsch, M. Middendorf, B. Hölldobler
An empirically based simulation of group foraging in the harvesting ant, Messor pergandei
Journal of Theoretical Biology, 340: 186–198, 2014.