M. Bernt, D. Merkle, M. Middendorf
An Algorithm for Inferring Mitochondrial Genome Rearrangements in a Phylogenetic Tree
Proc. 6th Annual RECOMB Satellite Meeting on Comparative Genomics, LNCS 5267, 143-157, 2008.
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S. Lange, M. Middendorf
SPP1148 booth: Hyperreconfigurable architectures
Proc. International Conference on Field Programmable Logic and Applications (FPL 2008), 353, 2008.

A. Brutschy, A. Scheidler, D. Merkle, M. Middendorf
Learning from House-Hunting Ants: Collective Decision-Making in Organic Computing Systems
Proc. 6th International Conference on Ant Colony Optimization and Swarm Intelligence (ANTS 2008), LNCS 5217, 96-107, 2008. This paper won the Best Paper Award of ANTS 2008.

A. Scheidler, C. Blum, D. Merkle, M. Middendorf
Emergent Sorting in Networks of Router Agents
Proc. 6th International Conference on Ant Colony Optimization and Swarm Intelligence (ANTS 2008),LNCS 5217, 299-306, 2008.

K. Diwold, D. Merkle, M. Middendorf
The Influence of Dynamic Environments on Polyethism in Response Threshold Models for Social Insects
Proc. 8th German Workshop on Artificial Life (GWAL-8 2008), Leipzig, Germany, July 30 - August 01, 2008.

A. Scheidler, D. Merkle, M. Middendorf
Congestion Control in Ant Like Moving Agent Systems
Accepted for 2nd IFIP Conference on Biologically Inspired Collaborative Computing (BICC), Springer, 33-44, 2008

T. Basuki Kurniawan, N. Khafifah Khalid, Z. Ibrahim, M. Khalid, M. Middendorf
Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System
Asia International Conference on Modelling and Simulation 2008: 905-910.

T. Thalheim, D. Merkle, M. Middendorf
A Hybrid Population based ACO Algorithm for Protein Folding
Proc. 2008 IAENG International Conference on Bioinformatics Hong Kong, 19-21 March, 2008

S. Lange, M. Middendorf
On the Reconfiguration Costs of Models for Partially Reconfigurable FPGAs
Proc. IV Southern Programmable Logic Conference (SPL'08), IEEE, 111-118, 2008.