CREx: references

Asakawa S, Himeno H, Miura K, and K., Watanabe
Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome.
Genetics, 1995, 140, 1047-60

Bérard S., Bergeron A., Chauve C., and Paul C.
Perfect sorting by reversals is not always difficult
IEEE/ACM Transaction on Computational Biology and Bioinformatics, 2007, 1, 4-16

Bergeron A. and Stoye J.
On the Similarity of Sets of Permutations and Its Applications to Genome Comparison
Journal of Computational Biology, 2006, 13, 1340 -1354

Bernt M., Merkle D., and Middendorf M.
A Fast and Optimal Algorithm for the Perfect Reversal Median Problem
International Symposium on Bioinformatics Research and Applications (ISBRA), ISBRA 2007 LNCS 4463 to appear

Booth K. S., and Lueker G. S.
Testing for the consecutive ones property, interval graphs, and graph planarity using PQ-tree algorithms
Journal of computer an System Sciences, 1976, 13, 335-379

Boore J.
Mitochondrial Genome Rearrangement Guide

Chaudhuri K., Chen K., Mihaescu R., and Rao S.
On the tandem duplication-random loss model of genome rearrangement
SODA, 2006, 564-570

Heber S., and Stoye J.
Algorithms for Finding Gene Clusters
Proceedings of WABI 2001, 2001, 252-263

Inoue J.G., Miya M., Tsukamoto K. and Nishida M.
Evolution of the deep-sea gulper eel mitochondrial genomes: large-scale gene rearrangements originated within the eels
Mol. Biol. Evol. 20 (11), 1917-1924 (2003)

Lavrov D.V., Boore J.L. and Brown W.M.
Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss
Mol. Biol. Evol. 19 (2), 163-169 (2002)

Parida L.
Using PQ Structures for Genomic Rearrangement Phylogeny
Journal of Computational Biology, 2006, 13, 1685 -1700

Perseke M., Fritzsch G., Ramsch K., Bernt M., Merkle D., Middendorf M., Bernhard D., Stadler P., and Schlegel M.
Evolution of Mitochondrial Gene Orders in Echinoderms

Scouras A., Beckenbach K., Arndt A., and Smith MJ.
Smith Complete mitochondrial genome DNA sequence for two ophiuroids and a holothuroid: the utility of protein gene sequence and gene maps in the analyses of deep deuterostome phylogeny.
Mol Phylogenet Evol., 2004, 31, 50-65

Uno T., and Yagiura M.
Fast Algorithms to Enumerate All Common Intervals of Two Permutations
Algorithmica, 2000, 26, 290 - 309