Matthias Bernt, Institut für Informatik, Uni Leipzig

Fakultät für Mathematik und Informatik	Institut für Informatik
Parallelverarbeitung und Komplexe Systeme

Matthias Bernt
E-Mail:: bernt @ informatik.uni-leipzig.de
Office address:: University of Leipzig
Faculty of Mathematics and Computer Science
Department of Computer Science
Johannisgasse 26
Mailing adress:: Matthias Bernt
Universität Leipzig
Fakultät für Mathematik und Informatik
Institut für Informatik
04109 Leipzig

M. Bernt, D. Merkle, M. Middendorf:
Solving the Preserving Reversal Median Problem
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 5, No. 3, 332-347, 2008
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Perseke M., Fritzsch G., Ramsch K., Bernt M., Merkle D., Middendorf M., Bernhard D., Stadler P. F. & Schlegel M.:
Evolution of Mitochondrial Gene Orders in Echinoderms
Molecular Phylogenetics and Evolution Vol. 47, Issue 2, 855-864, 2008
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M. Bernt, D. Merkle, K. Ramsch, G. Fritzsch, M. Perseke, D. Bernhard, M. Schlegel, P. F. Stadler, and M. Middendorf:
CREx: inferring genomic rearrangements based on common intervals
Bioinformatics 2007 23: 2957-2958
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M. Bernt, D. Merkle, M. Middendorf:
Using Median Sets for Inferring Phylogenetic Trees
Bioinformatics 2007 23: e129-e135 (special issue of ECCB 2006)
This paper won the 3rd prize in the Best Paper Competition of the 5th European Conference on Computational Biology (ECCB), Eilat, Israel, January 21-24, 2007.
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M. Bernt, D. Merkle, M. Middendorf:
Genome Rearrangement Based on Reversals that Preserve Conserved Intervals
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 3, No. 3, 275-288, 2006
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Bernt, M., Chen, M.-C., Merkle, D., Wang, H.-L., Chao, K.-M. and Middendorf, M.:
Finding All Sorting Tandem Duplication Random Loss Operations
Combinatorial Pattern Matching 2009, Lille (France), Lecture Notes in Computer Science, Vol. 5577, Springer, pp. 301-313
M. Bernt, D. Merkle, M. Middendorf:
An Algorithm for Inferring Mitochondrial Genome Rearrangements in a Phylogenetic Tree
Comparative Genomics International Workshop, RECOMB-CG 2008, 5267 Lecture Notes in Bioinformatics (LNBI), 143-157, 2008.
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M. Bernt, D. Merkle, M. Middendorf:
A Fast and Exact Algorithm for the Perfect Reversal Median Problem
Bioinformatics Research and Applications, 4463 Lecture Notes in Bioinformatics (LNBI), 305-316, 2007.
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M. Bernt, D. Merkle, M. Middendorf:
The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders.
Computational Life Sciences II: Second International Symposium CompLife 2006, Cambridge (UK), Sept. 2006, Lecture Notes in Bioinformatics, M.R. Berthold, R. Glen, I. Fischer (eds.), Vol. 4216, Springer, pp. 52-63, 2006
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M. Bernt, D. Merkle, M. Middendorf:
A Parallel Algorithm for Solving the Reversal Median Problem.
Proc. Parallel Processing and Applied Mathematics - Bio-Computing Workshop (PBC'5), LNCS 3911, 1089-1096, 2005.
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M. Bernt, D. Merkle, M. Middendorf:
A method for Solving the Preserving Reversal Median Problem.
Abstracts of Saxon Biotechnology Symposium 2007, Biotechnolgy Center, Technische Universität Dresden, 116, 2007.
M. Bernt, D. Merkle, M. Middendorf:
From genome rearrangements to phylogenies.
Abstracts of 5th Biotechnolgy Symposium 2006, Center of Biotechnolgy and Biomedicine, University of Leipzig, 59, 2006.
M. Bernt, D. Merkle, M. Middendorf:
Heuristics for the Reversal Median Problem: How to select good reversals?
Proc. of the 20th Dubrovnik International Course and Conference on the Interfaces Among Mathematics, Chemistry and Computer Sciences, Inter-University Centre Dubrovnik, 3, 2005.
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M. Bernt, D. Merkle, M. Middendorf:
Multiple Genome Rearrangement with conserved intervals.
Abstracts of 4th Biotechnolgy Symposium 2005, Center of Biotechnolgy and Biomedicine, University of Leipzig, 202, 2005.
M. Bernt, D. Merkle, M. Middendorf:
Solving the Multiple Genome Rearrangement Problem with Common Intervals
Proc. of the 19th Dubrovnik International Course and Conference on the Interfaces Among Mathematics, Chemistry and Computer Sciences, Inter-University Centre Dubrovnik, 6, 2004.
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Matthias Bernt