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| CREx Softwaretool for the analysis of gene order rearrangements based on common intervals |
Herunterladen und Informationen zu CREx
M. Bernt, D. Merkle, K. Ramsch, G. Fritzsch, M. Perserke, D. Bernhard, M. Schlegel, P. Stadler, M. Middendorf: CREx: Inferring Genomic Rearrangements Based on Common Intervals. Bioinformatics, 23(21):2957-2958, 2007.
M. Perseke, G. Fritzsch, K. Ramsch, M. Bernt, D. Merkle, M. Middendorf, D. Bernhard, P. F. Stadler, M. Schlegel: Evolution of Mitochondrial Gene Orders in Echinoderms. Molecular Phylogenetics and Evolution, online first, DOI 10.1016/j.ympev.2007.11.034, 2007.
| Tarzan Phylogeny software for the reconstruction of cophylogenies |
Download and Information on Tarzan
D. Merkle, M. Middendorf: Reconstruction of the Cophylogenetic History of Related Phylogenetic Trees with Divergence Timing Information. Theory in Biosciences 4: 277-299, 2005
| HelixPSO A Particle Swarm Optimizer (PSO) for RNA secondary structure prediction |
Download and Information on HelixPSO
M. Geis, M. Middendorf: A Particle Swarm Optimizer for Finding Minimum Free Energy RNA Secondary Structures. Proc. IEEE Swarm Intelligence Symposium, IEEE, 8 pp., 2007. Extended version submitted.